Screening of Potential Phytochemicals for the Identified Candidate Virulence Proteins in Enterobacter huaxiensis

Debleena Chatterjee¹ , Ipsita Chanda² and Archana Pan^1*

¹Department of Bioinformatics, Pondicherry University, Pondicherry, India.

²Department of Zoology, S.A. Jaipuria College, Kolkata, West Bengal, India.

Corresponding Author E-mail: archana@bicpu.edu.in

DOI : http://dx.doi.org/10.13005/bbra/3231

ABSTRACT: Enterobacter huaxiensis, a novel gram-negative bacterium of the family Enterobacteriaceae, was recovered from the blood of the patients at West China Hospital. The present study aims to predict potential lead molecules against the identified virulence-associated antibiotic-resistant protein for drug designing. Two virulence-associated antibiotic-resistance proteins belonging to the OqxAB efflux protein family of the RND superfamily were identified in the pathogen using bioinformatics tools/databases. Based on the structure prediction by homology modeling and validations, the RND transporter permease subunit, OqxB was selected as the potential target for lead identification. The binding pocket of the target protein was calculated using CASTp. A total of 204 phytochemicals were screened virtually to obtain compounds that had better binding affinity, drug-likeness and pharmacokinetic potential to be used as safe ligands against the target protein. Among these, Chrysoeriol, Isopimaric acid, Baicalein and Biochanin A were found to be within the permissible range of Lipinski rule of five for drug-likeness, possessing better ADMET properties, and lower target-protein binding energy (less than -8.0 kcal/mol). Ligand-protein docking showed stable non-covalent interactions between active site residues and ligands. Thus, these compounds may be considered potential inhibitors of the target protein that may inactivate the efflux pump and restore antibiotic sensitivity.

KEYWORDS: Antimicrobial resistance; E. huaxiensis; Efflux pump; Phytochemicals; Virulence

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